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Molecular dynamics simulation on DNA translocating through MoS
Daohui Zhao, Huang Chen, Yuqing Wang, Bei Li, Chongxiong Duan, Zhixian Li, Libo Li
Frontiers of Chemical Science and Engineering 2021, Volume 15, Issue 4, Pages 922-934 doi: 10.1007/s11705-020-2004-z
Keywords: DNA sequencing MoS2 molecular dynamics simulation nanopore ionic current
Engineering DNA Materials for Sustainable Data Storage Using a DNA Movable-Type System Article
Zi-Yi Gong, Li-Fu Song, Guang-Sheng Pei, Yu-Fei Dong, Bing-Zhi Li, Ying-Jin Yuan
Engineering 2023, Volume 29, Issue 10, Pages 130-136 doi: 10.1016/j.eng.2022.05.023
Keywords: 合成生物学 DNA信息存储 DNA活字存储系统 经济性DNA数据存储
Exome sequencing greatly expedites the progressive research of Mendelian diseases
Xuejun Zhang
Frontiers of Medicine 2014, Volume 8, Issue 1, Pages 42-57 doi: 10.1007/s11684-014-0303-9
The advent of whole-exome sequencing (WES) has facilitated the discovery of rare structure and functionalCombining exome sequencing with linkage studies is one of the most efficient strategies in searchingWe illustrate the workflow of exome capture and sequencing to highlight the advantages of WES.
Keywords: genetics whole-exome sequencing Mendelian disease disease gene
Information Science Should Take a Lead in Future Biomedical Research Perspective
Kenta Nakai
Engineering 2019, Volume 5, Issue 6, Pages 1155-1158 doi: 10.1016/j.eng.2019.07.023
Keywords: Data science Artificial intelligence Next-generation sequencing DNA Cancer genome Single-cell transcriptomics
The role of PARP1 in the DNA damage response and its application in tumor therapy
Zhifeng Wang, Fengli Wang, Tieshan Tang, Caixia Guo
Frontiers of Medicine 2012, Volume 6, Issue 2, Pages 156-164 doi: 10.1007/s11684-012-0197-3
Keywords: PARP1 synthetic lethality PARP inhibitor DNA repair cancer NHEJ
Functional role of ATM in the cellular response to DNA damage
Ming LIU, Wenxiang HU
Frontiers of Chemical Science and Engineering 2011, Volume 5, Issue 2, Pages 179-187 doi: 10.1007/s11705-009-0268-4
Keywords: ataxia-telangiectasia mutated (ATM) cell cycle checkpoint DNA damage signalling transduction
Generation and repair of AID-initiated DNA lesions in B lymphocytes
Zhangguo Chen,Jing H. Wang
Frontiers of Medicine 2014, Volume 8, Issue 2, Pages 201-216 doi: 10.1007/s11684-014-0324-4
Keywords: class switch recombination somatic hypermutation activation-induced deaminase DNA repair genomic instability
Molecular simulation of the interaction mechanism between CodY protein and DNA in
Linchen Yuan, Hao Wu, Yue Zhao, Xiaoyu Qin, Yanni Li
Frontiers of Chemical Science and Engineering 2019, Volume 13, Issue 1, Pages 133-139 doi: 10.1007/s11705-018-1737-4
Keywords: CodY DNA molecular docking molecular dynamics
Yi Cao
Frontiers of Medicine 2015, Volume 9, Issue 3, Pages 261-274 doi: 10.1007/s11684-015-0406-y
Keywords: environmental pollution DNA methylation cancer biomarker diagnosis therapy prevention
Effects of DNA damage on oocyte meiotic maturation and early embryonic development
Shen YIN,Junyu MA,Wei SHEN
Frontiers of Agricultural Science and Engineering 2014, Volume 1, Issue 3, Pages 185-190 doi: 10.15302/J-FASE-2014035
Keywords: DNA damage double-strand breaks (DSBs) oocyte embryo
Single-Molecule Methods for Characterizing Different DNA Higher-Order Structures Review
Yonglin Liu, Tianyuan Bian, Yan Liu, Zhimin Li, Yufeng Pei, Jie Song
Engineering 2023, Volume 24, Issue 5, Pages 277-292 doi: 10.1016/j.eng.2022.10.009
DNA is considered to be not only a carrier of the genetic information of life but also a highly programmableDifferent DNA structures are related to their biological and chemical functions.However, the bulk assay ignores the heterogeneity of DNA structures in solution.(ss/dsDNA), DNA higher-order structures, and DNA nanostructures.methods to understand the biophysical properties of DNA and other bio-matter and soft matter.
Keywords: Single-molecule methods DNA structure Mechanical properties Conformational transitions
A DNA Computing Model for the Graph Vertex Coloring Problem Based on a Probe Graph Article
Jin Xu, Xiaoli Qiang, Kai Zhang, Cheng Zhang, Jing Yang
Engineering 2018, Volume 4, Issue 1, Pages 61-77 doi: 10.1016/j.eng.2018.02.011
The biggest bottleneck in DNA computing is exponential explosion, in which the DNA molecules usedTo overcome this bottleneck and improve the processing speed, we propose a DNA computing model to solveIn this article, a 3-colorable graph with 61 vertices is used to illustrate the capability of the DNAAll these tiny strands are operated by DNA self-assembly and parallel PCR.the largest among both the electronic and non-electronic computers that have been developed since the DNA
Keywords: DNA computing Graph vertex coloring problem Polymerase chain reaction
Frontiers of Chemical Science and Engineering 2022, Volume 16, Issue 1, Pages 92-102 doi: 10.1007/s11705-021-2063-9
Keywords: hydrolysis reaction mitochondrial DNA damage in situ hydrophobic environment trigger fluorescence
Frontiers of Medicine 2022, Volume 16, Issue 2, Pages 240-250 doi: 10.1007/s11684-021-0909-7
Keywords: small RNAs 2′-O-methylation sequencing RT-qPCR
Bacterial inactivation, DNA damage, and faster ATP degradation induced by ultraviolet disinfection
Chao Yang, Wenjun Sun, Xiuwei Ao
Frontiers of Environmental Science & Engineering 2020, Volume 14, Issue 1, doi: 10.1007/s11783-019-1192-6
Keywords: UV disinfection DNA damage qPCR ATP
Title Author Date Type Operation
Molecular dynamics simulation on DNA translocating through MoS
Daohui Zhao, Huang Chen, Yuqing Wang, Bei Li, Chongxiong Duan, Zhixian Li, Libo Li
Journal Article
Engineering DNA Materials for Sustainable Data Storage Using a DNA Movable-Type System
Zi-Yi Gong, Li-Fu Song, Guang-Sheng Pei, Yu-Fei Dong, Bing-Zhi Li, Ying-Jin Yuan
Journal Article
Exome sequencing greatly expedites the progressive research of Mendelian diseases
Xuejun Zhang
Journal Article
The role of PARP1 in the DNA damage response and its application in tumor therapy
Zhifeng Wang, Fengli Wang, Tieshan Tang, Caixia Guo
Journal Article
Generation and repair of AID-initiated DNA lesions in B lymphocytes
Zhangguo Chen,Jing H. Wang
Journal Article
Molecular simulation of the interaction mechanism between CodY protein and DNA in
Linchen Yuan, Hao Wu, Yue Zhao, Xiaoyu Qin, Yanni Li
Journal Article
Environmental pollution and DNA methylation: carcinogenesis, clinical significance, and practical applications
Yi Cao
Journal Article
Effects of DNA damage on oocyte meiotic maturation and early embryonic development
Shen YIN,Junyu MA,Wei SHEN
Journal Article
Single-Molecule Methods for Characterizing Different DNA Higher-Order Structures
Yonglin Liu, Tianyuan Bian, Yan Liu, Zhimin Li, Yufeng Pei, Jie Song
Journal Article
A DNA Computing Model for the Graph Vertex Coloring Problem Based on a Probe Graph
Jin Xu, Xiaoli Qiang, Kai Zhang, Cheng Zhang, Jing Yang
Journal Article
hydrophobic environment triggering reactive fluorescence probe to real-time monitor mitochondrial DNA
Journal Article
Accurate quantification of 3′-terminal 2′-O-methylated small RNAs by utilizing oxidative deep sequencing
Journal Article